PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G27230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 479aa    MW: 50890.4 Da    PI: 8.7347
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G27230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.3e-08275300227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C  +     Ck+Gd+C+FaHg+
  ONIVA04G27230.1 275 KTRMCTKYNTAEGCKFGDKCHFAHGE 300
                      9***********************96 PP

2zf-CCCH37.34.6e-12446471127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC +f + GtC +GdrC+FaHg+
  ONIVA04G27230.1 446 YKTKLCENFVK-GTCTFGDRCHFAHGE 471
                      9**********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF055536.8E-14182216IPR008480Protein of unknown function DUF761, plant
PROSITE profilePS501036.981201235IPR000571Zinc finger, CCCH-type
PfamPF146081.2221232No hitNo description
PROSITE profilePS5010313.892273301IPR000571Zinc finger, CCCH-type
SMARTSM003560.046273300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13274305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-7274304IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4275300IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.05E-13340415IPR004088K Homology domain, type 1
SMARTSM003228.9E-11344414IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-14344414IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257345409IPR004088K Homology domain, type 1
PfamPF000133.0E-10347409IPR004088K Homology domain, type 1
CDDcd001051.73E-13347409No hitNo description
Gene3DG3DSA:4.10.1000.101.0E-14444475IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-9444475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.488445472IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8445471IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9446471IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAPLFHMEAL LPSSISPKLN SILHSHIYPQ VGHVFRALAK FKSLLLDVVR KKRAPTRGGG  60
GKKYAIGYRS RPEKSKKRIA SFMKLLRFNW AAAAAVTPAR AKDLELHYHP YYYDYDDSTW  120
NVVVPADGAA EELRGGGGDD GEDCGYLCWL EEETSADALP AAGEGEDGGN GNGDGDGNGA  180
VNEIDRLAER FIARCHAKFL LEKQESYRRY QEMMARSITI GCPFGEGCHF SHFVPGGYQA  240
VAKTLNLGNP AVPAPARAPM DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF GDKCHFAHGE  300
RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI SVDASLAGGI  360
IGKGGVNTKQ ICRVTGVKLS IRDHESDPNL KNIELEGNFD QIKQASNMVG ELIATISAST  420
PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG ENEQRKGAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066460.0AL606646.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8550380.0CR855038.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H1005F08, complete sequence.
GenBankCT8338350.0CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636567.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK10.0C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A0E0H7500.0A0A0E0H750_ORYNI; Uncharacterized protein
STRINGORGLA04G0249800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-50C3H family protein